Compresses VCF files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
VCF file
*.{vcf}
tbi{:bash}
tabix index file
*.{tbi}
fasta{:bash}
FASTA reference file
*.{fasta,fa}
mask{:bash}
BED file used for masking
*.{bed}
*.fa{:bash}
FASTA reference consensus file
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Create consensus sequence by applying VCF variants to a reference fasta file.
