Aggregates fastq files with demultiplexed reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastq_dir{:bash}
:directory
Directory containing the fastq files with demultiplexed reads
*
fastq{:bash}
*.fastq.gz{:bash}
:file
Aggregated FastQ files
*.{fastq.gz}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore
