Description

Takes a GFF3 file and converts to a bed12 file

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

gff{:bash}

:file

Input GFF3 file

*.{gff}

Output

name:type
description
pattern

bed{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.bed{:bash}

:file

Output bed12 file

*.bed

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

agat
GPL v3

Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.